PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G026100.1
Common NameB456_003G026100, LOC105787634
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 166aa    MW: 18136.3 Da    PI: 9.3943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G026100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171968255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ykG+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Gorai.003G026100.1 19 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 68
                        59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.971976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-301977IPR001471AP2/ERF domain
SMARTSM003806.2E-371982IPR001471AP2/ERF domain
PRINTSPR003672.4E-112031IPR001471AP2/ERF domain
CDDcd000183.90E-272078No hitNo description
SuperFamilySSF541715.56E-212077IPR016177DNA-binding domain
PfamPF008475.7E-112068IPR001471AP2/ERF domain
PRINTSPR003672.4E-115878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MENGTGVVAG SRKSSTERPY KGIRMRKWGK WVAEIREPNK RSRIWLGSYS TPVAAARAYD  60
TAVFYLRGPS ARLNFPDLLT GEKIGCGGGG DLSSASIRKK AIEVGARVDA LEAAAAHHHH  120
HHHHGHSYNG GDYCDELKPS NGGFLNRVDL NKMPDPEDSD GEWLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-142076663ATERF1
3gcc_A1e-142076663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9643531e-145JX964353.1 Gossypium hirsutum clone NBRI_TRANS-622 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469570.11e-120PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221743e-62ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A0D2NTQ61e-120A0A0D2NTQ6_G
STRINGBra017811.1-P8e-62(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.14e-61DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]